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Abstract Tropical floodplains are an important source of methane (CH₄) to the atmosphere, and ebullitive fluxes are likely to be important. We report direct measurements of CH₄ebullition in common habitats on the Amazon floodplain over two years based on floating chambers that allowed detection of bubbles, and submerged bubble traps. Ebullition was highly variable in space and time. Of the 840 floating chamber measurements (equivalent to 8,690 min of 10‐min deployments), 22% captured bubbles. Ebullitive CH₄fluxes, measured using bubble traps deployed for a total of approximately 230 days, ranged from 0 to 109 mmol CH₄m⁻² d⁻¹, with a mean of 4.4 mmol CH₄m⁻² d⁻¹. During falling water, a hydroacoustic echosounder detected bubbles in 24% of the 70‐m segments over 34 km. Ebullitive flux increased as the water level fell faster during falling water periods. In flooded forests, highest ebullitive fluxes occurred during falling water, while in open water and herbaceous plant habitats, higher ebullitive fluxes were measured during low water periods. The contribution of diffusive plus ebullitive CH₄flux represented by ebullition varied from 1% (high and rising water in open water of the lake) to 93% (falling water in flooded forests) based on bubble traps. Combining ebullitive and diffusive fluxes among habitats in relation to variations in water depth and areal coverage of aquatic habitats provides the basis for improved floodplain‐wide estimates of CH₄evasion.